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 Y. Yin, H. Fan, B. Zhou, Y. Hu, G. Fan, J. Wang, F. Zhou, W. Nie, C. Zhang, L. Liu, Z. Zhong, W. Zhu, G. Liu, Z. Lin, C. Liu, J. Zhou, G. Huang, Z. Li, J. Yu, Y. Zhang, Y. Yang, B. Zhuo, B. Zhang, J. Chang, H. Qian, Y. Peng, X. Chen, L. Chen, Z. Li, Q. Zhou*, W. Wang*, and F. Wei*, “Molecular mechanisms and topological consequences of drastic chromosomal rearrangements of muntjac deer,” Nat Commun, vol. 12, no. 1, pp. 6858, Nov 25, 2021.
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 J. Liu, M. Ali, and Q. Zhou*, “Establishment and evolution of heterochromatin,” Ann N Y Acad Sci, vol. 1476, no. 1, pp. 59-77, Sep, 2020.
 L. Xu*, M. Irestedt, and Q. Zhou, “Sequence Transpositions Restore Genes on the Highly Degenerated W Chromosomes of Songbirds,” Genes (Basel), vol. 11, no. 11, pp. 1267, Oct 28, 2020.
 L. Xu, and Q. Zhou*, “The Female-Specific W Chromosomes of Birds Have Conserved Gene Contents but Are Not Feminized,” Genes (Basel), vol. 11, no. 10, Sep 25, 2020.
 R. Wu, X. Xu, and Q. Zhou*, “Evolution of sex determination mechanisms and sex chromosomes,” SCIENTIA SINICA Vitae, vol. 49, no. 4, pp. 403-420, 2019.
 L. Xu, G. Auer, V. Peona, A. Suh, Y. Deng, S. Feng, G. Zhang, M. P. K. Blom, L. Christidis, S. Prost, M. Irestedt*, and Q. Zhou*, “Dynamic evolutionary history and gene content of sex chromosomes across diverse songbirds,” Nat Ecol Evol, vol. 3, no. 5, pp. 834-844, May, 2019.
 J. Y. Zhang, and Q. Zhou*, “On the Regulatory Evolution of New Genes Throughout Their Life History,” Mol Biol Evol, vol. 36, no. 1, pp. 15-27, Jan 1, 2019.
 J. Q. Lin#, Q. Zhou#, H. Q. Yang, L. M. Fang, K. Y. Tang, L. Sun, Q. H. Wan, and S. G. Fang*, “Molecular mechanism of temperature-dependent sex determination and differentiation in Chinese alligator revealed by developmental transcriptome profiling,” Sci Bull, vol. 63, no. 4, pp. 209-212, Feb 28, 2018.
 Z. Wang#, J. Lyu#, F. Wang, C. Miao, Z. Nan, J. Zhang, Y. Xi, Q. Zhou, X. Yang, and W. Ge*, “The histone deacetylase HDAC1 positively regulates Notch signaling during Drosophila wing development,” Biol Open, vol. 7, no. 2, Feb 20, 2018.
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 J. Zhang, J. Li, and Q. Zhou*, "Genomic and Transcriptomic Analyses of Avian Sex Chromosomes and Sex-Linked Genes," Avian and Reptilian Developmental Biology, pp. 69-85: Springer, 2017.
 L. Gibilisco, Q. Zhou, S. Mahajan, and D. Bachtrog*, “Alternative Splicing within and between Drosophila Species, Sexes, Tissues, and Developmental Stages,” PLoS Genet, vol. 12, no. 12, pp. e1006464, Dec, 2016.
 W. Yin#, Z. Wang#, Q. Y. Li, J. M. Lian, Y. Zhou, B. Z. Lu, L. J. Jin, P. X. Qiu, P. Zhang, W. B. Zhu, B. Wen, Y. J. Huang, Z. L. Lin, B. T. Qiu, X. W. Su, H. M. Yang, G. J. Zhang, G. M. Yan*, and Q. Zhou*, “Evolutionary trajectories of snake genes and genomes revealed by comparative analyses of five-pacer viper,” Nat Commun, vol. 7, pp. 13107, Oct 6, 2016.
 J. Zhang, C. Li, Q. Zhou, and G. Zhang*, “Improving the ostrich genome assembly using optical mapping data,” Gigascience, vol. 4, pp. 24, 2015.
 Q. Zhou, and D. Bachtrog*, “Ancestral Chromatin Configuration Constrains Chromatin Evolution on Differentiating Sex Chromosomes in Drosophila,” PLoS Genet, vol. 11, no. 6, pp. e1005331, Jun, 2015.
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 Y. Ding#, Q. Zhou#, and W. Wang*, “Origins of New Genes and Evolution of Their Novel Functions,” Annual Review of Ecology, Evolution, and Systematics, Vol 43, vol. 43, no. 1, pp. 345-363, 2012.
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 Z. Zhan, Y. Ding, R. Zhao, Y. Zhang, H. Yu, Q. Zhou, S. Yang, H. Xiang*, and W. Wang*, “Rapid functional divergence of a newly evolved polyubiquitin gene in Drosophila and its role in the trade-off between male fecundity and lifespan,” Mol Biol Evol, vol. 29, no. 5, pp. 1407-16, May, 2012.
 Q. Zhou, and D. Bachtrog*, “Chromosome-wide gene silencing initiates Y degeneration in Drosophila,” Curr Biol, vol. 22, no. 6, pp. 522-5, Mar 20, 2012.
 Q. Zhou, and D. Bachtrog*, “Sex-specific adaptation drives early sex chromosome evolution in Drosophila,” Science, vol. 337, no. 6092, pp. 341-5, Jul 20, 2012.
 Q. Zhou#, H. Zhu#, Q. Huang*, L. Zhao, G. Zhang, S. Roy, B. Vicoso, Z. Xuan, J. Ruan, Y. Zhang, R. Zhao, C. Ye, X. Zhang, J. Wang, W. Wang*, and D. Bachtrog*, “Deciphering neo-sex and B chromosome evolution by the draft genome of Drosophila albomicans,” BMC Genomics, vol. 13, no. 1, pp. 109, Mar 22, 2012.
 V. B. Kaiser*, Q. Zhou, and D. Bachtrog, “Nonrandom gene loss from the Drosophila miranda neo-Y chromosome,” Genome Biol Evol, vol. 3, pp. 1329-37, 2011.
 Y. Ding#, L. Zhao#, S. Yang, Y. Jiang, Y. Chen, R. Zhao, Y. Zhang, G. Zhang, Y. Dong, H. Yu, Q. Zhou, and W. Wang*, “A young Drosophila duplicate gene plays essential roles in spermatogenesis by regulating several Y-linked male fertility genes,” PLoS Genet, vol. 6, no. 12, pp. e1001255, Dec 23, 2010.
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 Q. Zhou#, J. Wang#, L. Huang#, W. Nie, J. Wang, Y. Liu, X. Zhao, F. Yang*, and W. Wang*, “Neo-sex chromosomes in the black muntjac recapitulate incipient evolution of mammalian sex chromosomes,” Genome Biol, vol. 9, no. 6, pp. R98, 2008.
 Q. Zhou, and W. Wang*, “On the origin and evolution of new genes--a genomic and experimental perspective,” J Genet Genomics, vol. 35, no. 11, pp. 639-48, Nov, 2008.
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 H. Yu*, H. Jiang, Q. Zhou, J. Yang, Y. Cun, B. Su, C. Xiao*, and W. Wang*, “Origination and evolution of a human-specific transmembrane protein gene, c1orf37-dup,” Hum Mol Genet, vol. 15, no. 11, pp. 1870-5, Jun 1, 2006.
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 Q. Zhou, and W. Wang*, “Detecting natural selection at the DNA level,” 2004.